Package: inDAGO
Title: A GUI for Dual and Bulk RNA-Sequencing Analysis
Version: 1.0.3
Authors@R: c(
    person("Carmine", "Fruggiero", , "fruggierocarmine3@gmail.com", role = c("aut","cre")),
    person("Gaetano", "Aufiero", , "gaetano.aufiero@gmail.com", role = "aut")
  )
Description: A 'shiny' app that supports both dual and bulk RNA-seq,
        with the dual RNA-seq functionality offering the flexibility to
        perform either a sequential approach (where reads are mapped
        separately to each genome) or a combined approach (where reads
        are aligned to a single merged genome). The user-friendly
        interface automates the analysis process, providing
        step-by-step guidance, making it easy for users to navigate
        between different analysis steps, and download intermediate
        results and publication-ready plots.
License: GPL (>= 3)
URL: https://github.com/inDAGOverse/inDAGO
BugReports: https://github.com/inDAGOverse/inDAGO/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: bigtabulate, bsicons, bslib, callr, checkmate, data.table,
        dplyr, DT, fs, ggplot2, ggrepel, grDevices, heatmaply, Hmisc,
        htmltools, magrittr, matrixStats, memuse, methods, paletteer,
        parallel, pheatmap, plotly, R.devices, readr, reshape2,
        rintrojs, seqinr, shiny, shinycssloaders, shinyFiles, shinyjs,
        shinyWidgets, spsComps, stats, svglite, tibble, tidyr, tools,
        upsetjs, UpSetR, utils
Suggests: BiocGenerics, BiocManager, Biostrings, edgeR, harrypotter,
        HTSFilter, limma, oompaBase, palr, Rsamtools, Rsubread,
        rtracklayer, S4Vectors, ShortRead, testthat (>= 3.0.0), XVector
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libssl-dev libx11-dev
        zlib1g-dev
Repository: https://indagoverse.r-universe.dev
Date/Publication: 2026-08-13 11:24:02 UTC
RemoteUrl: https://github.com/indagoverse/indago
RemoteRef: HEAD
RemoteSha: bfe5e5fe0b945bcc9445b8bf988d6574ab5385e0
NeedsCompilation: no
Packaged: 2026-09-19 11:21:13 UTC; root
Author: Carmine Fruggiero [aut, cre],
  Gaetano Aufiero [aut]
Maintainer: Carmine Fruggiero <fruggierocarmine3@gmail.com>